PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G078000.1
Common NameB456_006G078000, LOC105798875
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 200aa    MW: 21721.2 Da    PI: 9.0649
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G078000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.000864971123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C+ C++ F ++  L  H++ H
  Gorai.006G078000.1 49 FECQFCHRGFANSQALGGHQNAH 71
                        89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.73E-64776No hitNo description
Gene3DG3DSA:3.30.160.605.4E-44775IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.4274976IPR007087Zinc finger, C2H2
PROSITE patternPS0002805171IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MNSADNYGDD EPGCGKPSSS TMKLFGFQVG ADEECPPSVR RNVSEYRRFE CQFCHRGFAN  60
SQALGGHQNA HKRERRAKQG SFFTLHHQQQ QQLKQRFLTT GPVISPHSAR TRRLAYGRGS  120
TSMAPRGGLS AAAPSLPMLT PRGPCPFHVG GGGQGQGQGP FQVQNHEVGV NLTANEVIEE  180
DNIDLHLRLA PFIDRANGP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012484560.11e-147PREDICTED: zinc finger protein KNUCKLES-like
TrEMBLA0A0D2Q5A51e-147A0A0D2Q5A5_G
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2063845
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06650.15e-12C2H2 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]